created install and uninstall shell scripts - tested on ubuntu.

created dependencies text file to explain what is required.
created CardReaderService.conf file for supervisor configuration.

CardReaderService/CardReaderService.conf

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+[program:CardReaderService]
+command=mono-service CardReaderService.exe --no-daemon
+directory=/home/osboxes/CardReaderService
+stdout_logfile=/home/osboxes/CardReaderService/out.log
+redirect_stderr=true

CardReaderService/dependencies.txt

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+install:
+	- pcscd
+	- supervisor
+	- mono-complete
+
+copy CardReaderService.conf to /home/osboxes/CardReaderService
+

CardReaderService/install.sh

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+#!/bin/sh
+echo "Installing dependencies"
+apt-get install mono-complete pcscd supervisor -y
+echo "Installing service configuration file"
+cp CardReaderService.conf /etc/supervisor/conf.d/
+echo "Installing applicaton"
+mkdir /home/osboxes/CardReaderService
+cp CardReaderServiceHost/bin/Debug/*.* /home/osboxes/CardReaderService
+cd /home/osboxes/CardReaderService
+rm *.pdb
+rm *.vshost.exe
+rm *.vshost.exe.config
+rm *.vshost.exe.manifest
+echo "Starting application........."
+service supervisor restart

CardReaderService/uninstall.sh

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+echo "Stopping application...."
+service supervisor stop
+rm -f /etc/supervisor/conf.d/CardReaderService.conf
+echo "Removing Application.."
+rm -r -f /home/osboxes/CardReaderService
+echo "Removing application dependencies.."
+apt-get remove pcscd supervisor mono-complete -y